species:   Scscl
pid:       PID1643
parent:    Ssc-milR-119
paralog:   
locus:     NW_001820825.1:356744-356821
matures:   ['UCACCACCAUGAAGGUCGGUGAGA', 'UUAUUAACUGGUUCUUAGGCUGGGACG']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820825.1:356744-356821

2 out of bounds
13 alignments
13 proper strand
12 stranded perfect matches

         *****************************    **************************          
ACGUUGGAUUCUUAUUAACUGGUUCUUAGGCUGGGACGAGGGCGUCACCACCAUGAAGGUCGGUGAGAAGGCUACCUU
..((.(..((((((((.(((..(((...((.(((((((....)))).)))))..)))))).))))))))..).))...
--------------------------------------------UCACCACCAUGAAGGUCGGUGAGA---------- l=24 a=2 c
-----------UUAUUAACUGGUUCUUAGGCUGGGACG---------------------------------------- l=27 a=0 c*
--------------------------------------------UCACCACCAUGAAGGUCGGUGAGA---------- l=24 a=2 ma
-----------UUAUUAACUGGUUCUUAGGCUGGGACG---------------------------------------- l=27 a=0 ma*

-------------------------------------------------------AAGGUCGGUGAGAAGG------- l=16 a=1 
------------------------------------------------------GAAGGUCGGUGAGAAGGCU----- l=19 a=1 
----------------------------------------------------AUGAAGGUCGGUGAGAAG-------- l=18 a=1 
-------------------------------------------------gCCAUGAAGGUCGGUGAGA---------- l=19 a=1 
----------------------------------------------ACCACCAUGAAGGUCGG--------------- l=17 a=1 
----------------------------------------------ACCACCAUGAAGGUCGGUG------------- l=19 a=1 
---------------------------------------------CACCACCAUGAAGGUCGGU-------------- l=19 a=1 
---------------------------------------------CACCACCAUGAAGGUCGGUGAG----------- l=22 a=1 
--------------------------------------------UCACCACCAUGAAGGUCGGUGAGA---------- l=24 a=2 (c,ma)
-------------------------------------------GUCACCACCAUGAAGGUCGGU-------------- l=21 a=1 
------------------------------------------CGUCACCACCAUGAAGGUCGGUGAGA---------- l=26 a=2 

mb-01011
ax-1001011
ku-01
ss-101111101100
fn-111
